These files represent the preprocessed data used in:

Identifying and Mapping Cell-type Specic
Chromatin Programming of Gene Expression

Troels T. Marstrand & John Storey

The file basename is the cell-type, each file is sorted according to gene names (HGNC) and based on RefSeq 18 annotation.

*.expr_mean holds the mean gene expression across all probes for that gene
*.DHS_windows holds the non-normalized (chromosome arm scaled) DHS volumes for the regions indicated in the header. 
*.summary contains the total number of reads per chromosome arm for that cell-type. These values are used to calculate the scaling factors to apply to the values in the above files, see R-code for details.

All data should be extracted from the tar.gz archive and the ARS.R code pointed to the directory. It will read in all data and build R data structures for further analyses. Please refer to the R code for further details on usage. 

The primary data used in the study are available at GEO and the UCSC genome browser respectively. Accession numbers for the data is given in supplementary material of the publication.